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727 € Cheap Flights from San Juan to Tokyo

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      Travellers and cabin class, 1 Adult, Economy

      Compare San Juan to Tokyo flight deals

      Find the cheapest month or even day of the year to fly to Tokyo

      Book the best Tokyo fare with no extra fees

      Flight deals from San Juan to Tokyo

      Looking for a cheap last-minute deal or the best return flight from San Juan to Tokyo? If you want to travel next month, return fares start from 938 €. Find the lowest prices on one-way and return tickets right here.
      Tokyo.727 € per passenger.Departing Wed, 4 Nov, returning Tue, 17 Nov.Return flight with Frontier Airlines and Zipair.Outbound indirect flight with Frontier Airlines, departs from San Juan Luis Munoz Marin on Wed, 4 Nov, arriving in Tokyo Narita.Inbound indirect flight with Zipair, departs from Tokyo Narita on Tue, 17 Nov, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From 727 €, select.
      Tokyo.842 € per passenger.Departing Tue, 20 Oct, returning Tue, 3 Nov.Return flight with Frontier Airlines and Zipair.Outbound indirect flight with Frontier Airlines, departs from San Juan Luis Munoz Marin on Tue, 20 Oct, arriving in Tokyo Narita.Inbound indirect flight with Zipair, departs from Tokyo Narita on Tue, 3 Nov, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From 842 €, select.
      Tokyo.862 € per passenger.Departing Sat, 19 Sep, returning Tue, 29 Sep.Return flight with Delta.Outbound indirect flight with Delta, departs from San Juan Luis Munoz Marin on Sat, 19 Sep, arriving in Tokyo Haneda.Inbound indirect flight with Delta, departs from Tokyo Haneda on Tue, 29 Sep, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From 862 €, select.
      Tokyo.901 € per passenger.Departing Sun, 20 Sep, returning Mon, 5 Oct.Return flight with United.Outbound indirect flight with United, departs from San Juan Luis Munoz Marin on Sun, 20 Sep, arriving in Tokyo Haneda.Inbound indirect flight with United, departs from Tokyo Narita on Mon, 5 Oct, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From 901 €, select.
      Tokyo.938 € per passenger.Departing Tue, 20 Oct, returning Tue, 27 Oct.Return flight with Frontier Airlines and Zipair.Outbound indirect flight with Frontier Airlines, departs from San Juan Luis Munoz Marin on Tue, 20 Oct, arriving in Tokyo Narita.Inbound indirect flight with Zipair, departs from Tokyo Narita on Tue, 27 Oct, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From 938 €, select.
      Tokyo.966 € per passenger.Departing Sat, 16 Jan, returning Thu, 21 Jan.Return flight with Air Canada.Outbound indirect flight with Air Canada, departs from San Juan Luis Munoz Marin on Sat, 16 Jan, arriving in Tokyo Narita.Inbound indirect flight with Air Canada, departs from Tokyo Narita on Thu, 21 Jan, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From 966 €, select.
      Tokyo.989 € per passenger.Departing Fri, 13 Nov, returning Wed, 2 Dec.Return flight with Frontier Airlines and Zipair.Outbound indirect flight with Frontier Airlines, departs from San Juan Luis Munoz Marin on Fri, 13 Nov, arriving in Tokyo Narita.Inbound indirect flight with Zipair, departs from Tokyo Narita on Wed, 2 Dec, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From 989 €, select.
      Tokyo.999 € per passenger.Departing Fri, 25 Dec, returning Fri, 29 Jan.Return flight with Frontier Airlines and Zipair.Outbound indirect flight with Frontier Airlines, departs from San Juan Luis Munoz Marin on Fri, 25 Dec, arriving in Tokyo Narita.Inbound indirect flight with Zipair, departs from Tokyo Narita on Fri, 29 Jan, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From 999 €, select.
      Tokyo.1.056 € per passenger.Departing Wed, 9 Dec, returning Thu, 24 Dec.Return flight with Frontier Airlines and Zipair.Outbound indirect flight with Frontier Airlines, departs from San Juan Luis Munoz Marin on Wed, 9 Dec, arriving in Tokyo Narita.Inbound indirect flight with Zipair, departs from Tokyo Narita on Thu, 24 Dec, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From 1.056 €, select.
      Tokyo.1.074 € per passenger.Departing Fri, 5 Feb, returning Fri, 19 Mar.Return flight with Air Canada.Outbound indirect flight with Air Canada, departs from San Juan Luis Munoz Marin on Fri, 5 Feb, arriving in Tokyo Narita.Inbound indirect flight with Air Canada, departs from Tokyo Narita on Fri, 19 Mar, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From 1.074 €, select.
      Tokyo.1.125 € per passenger.Departing Wed, 20 Jan, returning Fri, 5 Feb.Return flight with jetBlue and Zipair.Outbound indirect flight with jetBlue, departs from San Juan Luis Munoz Marin on Wed, 20 Jan, arriving in Tokyo Narita.Inbound indirect flight with Zipair, departs from Tokyo Narita on Fri, 5 Feb, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From 1.125 €, select.
      Tokyo.1.138 € per passenger.Departing Sun, 7 Mar, returning Fri, 19 Mar.Return flight with United.Outbound indirect flight with United, departs from San Juan Luis Munoz Marin on Sun, 7 Mar, arriving in Tokyo Haneda.Inbound indirect flight with United, departs from Tokyo Narita on Fri, 19 Mar, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From 1.138 €, select.
      Tokyo.1.162 € per passenger.Departing Mon, 1 Feb, returning Sun, 14 Feb.Return flight with Delta.Outbound indirect flight with Delta, departs from San Juan Luis Munoz Marin on Mon, 1 Feb, arriving in Tokyo Haneda.Inbound indirect flight with Delta, departs from Tokyo Haneda on Sun, 14 Feb, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From 1.162 €, select.
      Tokyo.1.402 € per passenger.Departing Mon, 10 May, returning Mon, 17 May.Return flight with Qatar Airways.Outbound indirect flight with Qatar Airways, departs from San Juan Luis Munoz Marin on Mon, 10 May, arriving in Tokyo Haneda.Inbound indirect flight with Qatar Airways, departs from Tokyo Haneda on Mon, 17 May, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From 1.402 €, select.
      Tokyo.1.416 € per passenger.Departing Sat, 27 Mar, returning Tue, 27 Apr.Return flight with WestJet and Philippine Airlines.Outbound indirect flight with WestJet, departs from San Juan Luis Munoz Marin on Sat, 27 Mar, arriving in Tokyo Narita.Inbound indirect flight with Philippine Airlines, departs from Tokyo Narita on Tue, 27 Apr, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From 1.416 €, select.
      Tokyo.1.441 € per passenger.Departing Sat, 3 Apr, returning Sun, 11 Apr.Return flight with United.Outbound indirect flight with United, departs from San Juan Luis Munoz Marin on Sat, 3 Apr, arriving in Tokyo Haneda.Inbound indirect flight with United, departs from Tokyo Narita on Sun, 11 Apr, arriving in San Juan Luis Munoz Marin.Price includes taxes and charges.From 1.441 €, select.

      Find the cheapest month to fly from San Juan to Tokyo

      We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like San Juan to Tokyo flights are currently cheapest in November.
      Sep
      from 862 €
      Oct
      from 938 €
      Nov
      from 727 €
      Dec
      from 1.056 €
      Jan
      from 966 €
      Feb
      from 1.162 €
      Mar
      from 1.138 €
      Apr
      from 1.441 €
      May
      from 1.402 €
      Jun
      from 1.447 €
      Jul
      from 1.663 €
      Aug
      from 1.445 €

      Alternative San Juan to Tokyo routes

      Looking for the cheapest, fastest or easiest route from San Juan to Tokyo? You could fly into the following airports instead.

      Tokyo Haneda

      17km from central Tokyo
      Closest
      from 862 €
      Search flights

      Tokyo Narita

      64km from central Tokyo
      Cheapest
      from 727 €
      Search flights

      Ibaraki

      85km from central Tokyo
      Search flights

      San Juan to Tokyo: Flight information

      The things to know before you go.
      Cheapest flight found727 €
      Cheapest month to flyNovember

      Finding cheap flights from San Juan to Tokyo: Frequently asked questions

      There are 3 airports in Tokyo: Tokyo Haneda, Tokyo Narita and Ibaraki.
      The best price we found for a return flight from San Juan to Tokyo is 727 €. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.
      Currently, there are no airlines that fly direct from San Juan to Tokyo. But we found flights with one or more stops from 727 €.
      As of September 2026, there are no flights flying from San Juan to Tokyo.
      The cheapest month to fly from San Juan to Tokyo is usually November.
      If you're flying from San Juan, the cheapest airport near Tokyo is Tokyo Narita – which is 63.8 km away from the centre of Tokyo. We've found flights into this airport from 727 €.
      After crunching the numbers on our flight calendar, we found that it is currently cheapest to fly from San Juan to Tokyo on Wednesday, 4 November 2026.
      No airlines currently offer direct flights between San Juan and Tokyo. Most routes have one or more stops.
      We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to Tokyo but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.

      We crunched all the numbers in our flight calendar and it looks like the cheapest time to book a flight to Tokyo is around 40 days in advance, so don’t leave your flight to the last minute.

      In September, the average temperature is usually around 26°C. August is typically the warmest month in Tokyo, when it usually averages around 33°C. You can expect the least rain in January. The coldest month is January, with temperatures averaging 1°C. The rainiest month is June.
      The cheapest airline that flies to Tokyo is Frontier Airlines .

      Travelling from San Juan to Tokyo: what you need to know

      • San Juan's main base, San Juan Luis Munoz Marin Airport (SJU), is where many unforgettable trips begin. Explore the options for leaving from here when booking your flight from San Juan to Tokyo.

      • Touch down in Tokyo at Tokyo Haneda Airport (HND) or Tokyo Narita Airport (NRT).

      • The timezone in Tokyo is UTC+9, which is 13 hours ahead of San Juan.

      • For a relaxed travel experience, turn up at the airport two hours ahead of international flights and one hour before domestic departures. This leaves you with plenty of time to catch your San Juan to Tokyo flight.

      • During popular months like July, it's a good idea to get to the airport earlier than usual. Plan to arrive two hours before a domestic departure and four hours ahead of international flights whenever you're travelling during a peak period in general.

      How to find the cheapest flights from San Juan to Tokyo

      • Booking ahead of time is often the key to scoring a cheap San Juan to Tokyo flight. Flight prices rise as demand increases, so the nearer your departure date, the more you'll likely pay.

      • The 'Whole month' search tool will show you the cheapest plane tickets from San Juan to Tokyo throughout the month. It's an easy way to find a bargain if your travel dates are flexible.

      • Locking in a cheap flight from San Juan to Tokyo is easy with Price Alerts. All you need to do is set up one of these automatic alerts and we'll notify you when a better deal is available.

      • Select your preferred arrival and departure times, number of stops and airlines with the filters. Alternatively, sort your San Juan to Tokyo flight results by 'Cheapest,' 'Best' or 'Fastest.'

      Flying from San Juan

      San Juan Luis Munoz Marin Airport (SJU)

      • Stopovers are the ideal opportunity to take a break from travelling — and possibly even visit a new city. When searching for San Juan to Tokyo flights departing from San Juan Luis Munoz Marin Airport, uncheck the 'Direct flights only' box to see where you can visit along the way. Consider one of these popular options:

        • Dallas Fort Worth International Airport (DFW)

        • New York John F. Kennedy Airport (JFK)

        • New York Newark Airport (EWR)

      • SJU is about 11 kilometres from central San Juan. If you're catching a taxi, ride-sharing or driving from the centre, it'll take you 20 minutes or so to get there, depending on traffic conditions. If you're taking public transport, expect the journey time to be around 1 hour.

      • Want a handy hotel close to San Juan Luis Munoz Marin Airport? If you've booked an early flight from San Juan to Tokyo, these stays will have you moments from your departure gate:

      • San Juan Luis Munoz Marin Airport has an excellent on-time performance, so flight disruptions are less likely. Departures from SJU make it to their destination as scheduled 81% of the time.

      Arriving in Tokyo

      Tokyo Haneda Airport (HND)

      • Tokyo Haneda Airport (HND) is approximately 16 kilometres from central Tokyo. If you're catching a taxi or a ride-share, the drive takes roughly 25 minutes.

      • Getting there by public transport will take you roughly 30 minutes.

      • If you have a late flight from San Juan to Tokyo, nothing beats the convenience of staying near the terminal. Grab your luggage from the carousel and then be showered and relaxing not long after at one of these hotels near HND:

      • Get your adventure underway by picking up a Tokyo Haneda Airport rental car. Grab your wheels from Europcar, Nissan Rent a Car or Times and explore beyond Tokyo's usual tourist stops.

      • Get the best deal by reserving your vehicle from Tokyo Haneda Airport around three weeks before your departure date.

      • HND is located at 3丁目 Hanedakuko, Ota.

      Tokyo Narita Airport (NRT)

      • As soon as your flight from San Juan to Tokyo has hit the runway, you can get to the city centre in about 1 hour 5 minutes by car. Central Tokyo is approximately 64 kilometres from Tokyo Narita Airport (NRT).

      • If you're catching public transport, it'll take about 1 hour.

      • You'll find some comfortable places ready to welcome you near NRT. Settle in and get cosy after your San Juan to Tokyo flight at one of these perfectly located options:

      • The fastest way to reach your destination is with a Tokyo Narita Airport rental car. Pick up your wheels from Airport Car Rental, JDM Rent a car or Miki Car Rental and make a speedy getaway.

      • Avoid last-minute price surges. Reserving your ride four weeks ahead of your arrival at NRT can help you lock in a better rate.

      • Tokyo Narita Airport can be found at 成田空港第2PTB(バス), Narita.

      Best time to go to Tokyo

      • March is the quietest month for flights from San Juan to Tokyo, while April is the most popular. Work out the best time to go to Tokyo based on whether you like a lively atmosphere or a more laid-back vibe.

      • When booking your San Juan to Tokyo tickets, consider the weather you're most comfortable in. August is the warmest month in Tokyo, with temperatures ranging from 23ºC (73ºF) to 29ºC (84ºF).

      • January has average temperatures of between 9ºC (48ºF) and 15ºC (59ºF). Search for cheap flights from San Juan to Tokyo around that time if you want to travel when it's cooler.

      More about Tokyo

      • Start your Tokyo trip off on the right foot by choosing the ideal place to stay. As soon as you've booked your flight from San Juan to Tokyo, browse our range of accommodation options including:

      • TOKYO SKYTREE and Sensho-ji are just a couple of the leading attractions to add to your Tokyo to-do list. Continue your sightseeing adventures at Ginza Central Street.

      Explore more of Japan

      • Osaka is just one of the many places in Japan waiting to be discovered once you've taken in the sights of Tokyo. Around 402 kilometres to the west, popular attractions include Dotonbori, Osaka Castle and Universal Studios Japan.

      • If you're looking to explore another side of Japan, consider Nagoya, about 257 kilometres west of Tokyo. Nagoya Castle, Sky Promenade and Port Of Nagoya Public Aquarium are key reasons to visit.

      Plan the rest of your trip from San Juan to Tokyo

      Prices shown on this page are estimated lowest prices only. Found in the last 12 days.