124 € Cheap Flights from Mykonos to Crete Heraklion

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Travellers and cabin class, 1 Adult, Economy

Compare Mykonos to Crete Heraklion flight deals

Find the cheapest month or even day of the year to fly to Crete Heraklion

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Flight deals from Mykonos to Crete Heraklion

Looking for a cheap last-minute deal or the best return flight from Mykonos Airport to Crete Heraklion Airport? If you want to travel next month, return fares start from 159 €. Find the lowest prices on one-way and return tickets right here.

Heraklion.124 € per passenger.Departing Fri, 11 Sep, returning Sun, 13 Sep.Return flight with Aegean Airlines.Outbound direct flight with Aegean Airlines departs from Mykonos on Fri, 11 Sep, arriving in Crete Heraklion.Inbound direct flight with Aegean Airlines departs from Crete Heraklion on Sun, 13 Sep, arriving in Mykonos.Price includes taxes and charges.From 124 €, select.

Heraklion.150 € per passenger.Departing Thu, 12 Nov, returning Sun, 22 Nov.Return flight with SKY express.Outbound indirect flight with SKY express, departs from Mykonos on Thu, 12 Nov, arriving in Crete Heraklion.Inbound indirect flight with SKY express, departs from Crete Heraklion on Sun, 22 Nov, arriving in Mykonos.Price includes taxes and charges.From 150 €, select.

Heraklion.154 € per passenger.Departing Tue, 20 Oct, returning Tue, 3 Nov.Return flight with SKY express.Outbound indirect flight with SKY express, departs from Mykonos on Tue, 20 Oct, arriving in Crete Heraklion.Inbound indirect flight with SKY express, departs from Crete Heraklion on Tue, 3 Nov, arriving in Mykonos.Price includes taxes and charges.From 154 €, select.

Heraklion.157 € per passenger.Departing Sat, 30 Jan, returning Sun, 31 Jan.Return flight with SKY express and Aegean Airlines.Outbound indirect flight with SKY express, departs from Mykonos on Sat, 30 Jan, arriving in Crete Heraklion.Inbound indirect flight with Aegean Airlines, departs from Crete Heraklion on Sun, 31 Jan, arriving in Mykonos.Price includes taxes and charges.From 157 €, select.

Heraklion.159 € per passenger.Departing Mon, 12 Oct, returning Wed, 21 Oct.Return flight with SKY express.Outbound indirect flight with SKY express, departs from Mykonos on Mon, 12 Oct, arriving in Crete Heraklion.Inbound indirect flight with SKY express, departs from Crete Heraklion on Wed, 21 Oct, arriving in Mykonos.Price includes taxes and charges.From 159 €, select.

Heraklion.174 € per passenger.Departing Thu, 20 May, returning Fri, 21 May.Return flight with SKY express.Outbound indirect flight with SKY express, departs from Mykonos on Thu, 20 May, arriving in Crete Heraklion.Inbound indirect flight with SKY express, departs from Crete Heraklion on Fri, 21 May, arriving in Mykonos.Price includes taxes and charges.From 174 €, select.

Heraklion.174 € per passenger.Departing Thu, 3 Jun, returning Fri, 4 Jun.Return flight with SKY express.Outbound indirect flight with SKY express, departs from Mykonos on Thu, 3 Jun, arriving in Crete Heraklion.Inbound indirect flight with SKY express, departs from Crete Heraklion on Fri, 4 Jun, arriving in Mykonos.Price includes taxes and charges.From 174 €, select.

Heraklion.174 € per passenger.Departing Thu, 20 May, returning Wed, 2 Jun.Return flight with SKY express.Outbound indirect flight with SKY express, departs from Mykonos on Thu, 20 May, arriving in Crete Heraklion.Inbound indirect flight with SKY express, departs from Crete Heraklion on Wed, 2 Jun, arriving in Mykonos.Price includes taxes and charges.From 174 €, select.

Heraklion.181 € per passenger.Departing Wed, 30 Sep, returning Mon, 5 Oct.Return flight with SKY express.Outbound indirect flight with SKY express, departs from Mykonos on Wed, 30 Sep, arriving in Crete Heraklion.Inbound indirect flight with SKY express, departs from Crete Heraklion on Mon, 5 Oct, arriving in Mykonos.Price includes taxes and charges.From 181 €, select.

Heraklion.187 € per passenger.Departing Fri, 18 Dec, returning Thu, 7 Jan.Return flight with SKY express.Outbound indirect flight with SKY express, departs from Mykonos on Fri, 18 Dec, arriving in Crete Heraklion.Inbound indirect flight with SKY express, departs from Crete Heraklion on Thu, 7 Jan, arriving in Mykonos.Price includes taxes and charges.From 187 €, select.

Find the cheapest month to fly from Mykonos to Crete Heraklion

We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like Mykonos to Crete Heraklion flights are currently cheapest in September.

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Direct flights from Mykonos to Crete Heraklion

Mykonos to Crete Heraklion: Alternative routes

Compare routes from Mykonos to Heraklion below. You may find an airport to fly into that's cheaper, faster, or easier than Crete Heraklion.

Crete Heraklion

4km from central Heraklion

ClosestCheapest

from 124 €

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Sitia

90km from central Heraklion

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Mykonos to Heraklion: Flight information

The things to know before you go.

Cheapest flight found	124 €
Cheapest month to fly	September
Average flight time	1 hr
Most popular airline	Olympic Air
Average flights per week	5

Finding cheap flights from Mykonos to Crete Heraklion: Frequently asked questions

How much are return flights from Mykonos to Crete Heraklion?

The best price we found for a return flight from Mykonos to Crete Heraklion is 124 €. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.

How long does it take to fly from Mykonos to Crete Heraklion?

1 hour is the average flight time from Mykonos to Crete Heraklion.

Which airlines fly direct from Mykonos to Crete Heraklion?

Olympic Air and Aegean Airlines fly direct from Mykonos to Crete Heraklion.

How many flights are there a week from Mykonos to Crete Heraklion?

As of September 2026, there are 5 flights per week flying from Mykonos to Crete Heraklion.

When is the cheapest time to fly from Mykonos to Crete Heraklion?

The cheapest month to fly from Mykonos to Crete Heraklion is usually September.

Which upcoming date is cheapest to fly from Mykonos Airport to Crete Heraklion Airport on?

After crunching the numbers on our flight calendar, we found that it's currently cheapest to fly from Mykonos Airport to Crete Heraklion Airport on Friday, 11 September 2026.

Can I get a direct flight from Mykonos Airport to Crete Heraklion Airport?

Yes – the average flight time is 1 hour.

How can I find the best flight deal to Crete Heraklion?

We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to Crete Heraklion but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.

When is the best time to book flights to Heraklion?

We crunched all the numbers in our flight calendar and it looks like the cheapest time to book a flight to Heraklion is around 40 days in advance, so don’t leave your flight to the last minute.

Which is the cheapest airline to fly from Mykonos Airport to Crete Heraklion with?

Currently, Aegean Airlines offers the cheapest flight tickets to Crete Heraklion.

Travelling from Mykonos Airport (JMK) to Crete Heraklion Airport (HER): what you need to know

Around 1 hour is how long you'll be travelling on a direct flight from Mykonos Airport to Crete Heraklion Airport.
Mykonos and Heraklion are in the same timezone, UTC+2.
To ensure you catch your JMK to HER flight, allow plenty of time to check in and find your gate. Arriving two hours ahead of international departures and one hour before domestic flights is the general travel rule.
During popular months like August, you'll want to get to the airport even earlier. Arrive two hours before a domestic departure and four hours ahead of an international flight whenever you're travelling during peak periods in general.
Flying into Heraklion (and then seeing more of Greece!) is easy with Aegean Airlines. This popular airline has direct flights from Mykonos Airport to Crete Heraklion Airport.
Most passengers choose to fly with Aegean Airlines on this route.
Consider adding a stopover when booking your ticket from Mykonos Airport to Crete Heraklion Airport. Just deselect 'Direct flights only' to break up your trip, or visit a new city along the way. Check out these options between JMK and HER:
- Athens International Airport
- Ben Gurion Intl Airport
- Naples International Airport

How to find the cheapest flights from Mykonos Airport (JMK) to Crete Heraklion Airport (HER)

Currently, 71 € is the cheapest price we've seen for a one-way Mykonos Airport to Crete Heraklion Airport flight. The best price for a return ticket is 124 €. Keep in mind that fares can change due to availability at the time of booking.
Don't wait until the last minute. You're more likely to find cheap tickets from JMK to HER if you book early. Airlines often offer some excellent early bird discounts.
If you're flexible with your trip dates, try using the 'Whole month' tool. It'll find the lowest price across each month when searching for your flight from Mykonos Airport to Crete Heraklion Airport.
Spend less time searching for cheap flights from JMK to HER by creating a Price Alert. You'll get an email or notification on the app when fares go down.
Tailor your trip using filters. Select your arrival and departure times, airlines and total journey duration. You can also sort results by 'Fastest,' 'Cheapest' or 'Best' flights from Mykonos Airport to Crete Heraklion Airport.

Handy information about Mykonos Airport (JMK)

87% of flights leaving Mykonos Airport touch down at their destination on schedule. Given its strong performance rating, disruptions are unlikely when taking off from JMK.
Central Mykonos to Mykonos Airport is around 3 kilometres. Depending on traffic, it'll take you about 10 minutes to get there if you're driving, ride-sharing or catching a taxi.
Taking public transport? Expect a trip time of around 10 minutes.
Have an early flight from Mykonos Airport to Crete Heraklion Airport? Avoid the last-minute rush to the terminal (and get some extra shut-eye) by choosing one of these hotels close to JMK:

Arriving at Crete Heraklion Airport (HER)

Consider booking a hotel near HER if you're taking a late Mykonos Airport to Crete Heraklion Airport flight. Choose one of these accommodation options and make your arrival easier:
Grab a Crete Heraklion Airport rental car and explore Heraklion and beyond with your own wheels. Surprice, Car & Go and Right Cars are well-known companies to choose from here.
Lock in the best deal by booking your vehicle from Crete Heraklion Airport around three weeks ahead of your departure.

When to fly to Crete Heraklion Airport (HER)

It's time to plan your travel dates for your flight from Mykonos Airport to Crete Heraklion Airport. August is the busiest month to visit Heraklion. If you like a more relaxed vibe, go in March.
When reserving your flight from Mykonos Airport to Crete Heraklion Airport, think about the kind of weather you enjoy. July is the warmest month in Heraklion, with the temperature ranging from 20ºC (68ºF) to 33ºC (91ºF).
If you want to travel in cooler conditions, search for a cheap ticket from JMK to HER in January. Average temperatures are between 7ºC (45ºF) and 16ºC (61ºF) then.

Explore more of Greece

Athens is just one of the many cities in Greece waiting to be discovered once you've taken in the sights of Heraklion. Around 322 kilometres away to the north-west, well-known attractions include Acropolis of Athens, The Parthenon and Erechtheion.