583 € Cheap Flights from Malaga to San Juan

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Flight deals from Malaga to San Juan

Looking for a cheap last-minute deal or the best return flight from Malaga to San Juan? Find the lowest prices on one-way and return tickets right here.

Find the cheapest month to fly from Malaga to San Juan

We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like Malaga to San Juan flights are currently cheapest in May.

Málaga to San Juan: Flight information

The things to know before you go.
Cheapest flight found583 €
Cheapest month to flySeptember

Finding cheap flights from Malaga to San Juan: Frequently asked questions

There are 6 airports in San Juan: San Juan Isla Grande, San Juan Luis Munoz Marin, Roosevelt Roads, Ponce, Vieques, and Culebra.
The best price we found for a return flight from Malaga to San Juan is 583 €. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.
Currently, there are no airlines that fly direct from Malaga to San Juan. But we found flights with one or more stops from 583 €.
As of February 2026, there are no flights flying from Malaga to San Juan.
The cheapest month to fly from Malaga to San Juan is usually September.
If you're flying from Malaga Airport, the cheapest airport near San Juan is San Juan Luis Munoz Marin – which is 11.3 km away from the centre of San Juan. We've found flights into this airport from 583 €.
After crunching the numbers on our flight calendar, we found that it's currently cheapest to fly from Malaga Airport to San Juan on Wednesday, 16 September 2026.
No airlines currently offer direct flights between Malaga Airport and San Juan. Most routes have one or more stops.
We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to San Juan but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.
We crunched all the numbers in our flight calendar and it looks like the cheapest time to book a flight to San Juan is around 40 days in advance, so don’t leave your flight to the last minute.
In February, the average temperature is usually around 25°C. August is typically the warmest month in San Juan, when it usually averages around 29°C. You can expect the least rain in February. The coldest month is January, with temperatures averaging 23°C. The rainiest month is September.
Currently, United offers the cheapest flight tickets to San Juan.

Flying from Malaga Airport (AGP) to San Juan: what you need to know

  • San Juan is five hours behind Málaga, where Malaga Airport is located. San Juan runs on the UTC-4 timezone.

  • Leave plenty of time to get on your AGP to San Juan flight. Generally, it's best to arrive at least two hours before international departures and an hour ahead for domestic flights.

  • Taking off during a peak period like school or public holidays? Expect longer queues at security and check-in. To be on the safe side, arrive up to four hours before international flights and two hours ahead of domestic departures.

  • Stopovers offer the opportunity to visit a new place or just have a break during your journey. When searching for a plane ticket from AGP to San Juan, uncheck 'Direct flights only' to explore all potential stops. Adolfo Suarez Madrid-Barajas Airport (MAD) is a great option.

  • Located around 8 kilometres from the centre of Málaga, AGP can be reached in about 25 minutes by car. Travelling on public transport takes roughly 50 minutes.

  • In search of a hotel near AGP? If you're catching an early flight from Malaga Airport to San Juan, these stays put the terminal practically at your doorstep:

  • Of the flights that depart from Malaga Airport, 72.02% touch down on time at their destination.

How to find the cheapest flights from Malaga Airport (AGP) to San Juan

  • 313 € is the lowest price we've seen for a one-way Malaga Airport to San Juan flight. A return plane ticket right now is 583 €. Depending on how early you book and the availability, these fares can change.

  • Booking in advance is often the key to locking in a cheap flight from AGP to San Juan. Fares tend to rise as demand increases, so the closer you get to departure, the more expensive your ticket may be.

  • If you're flexible with your trip dates, use the 'Whole month' tool. It'll find the cheapest price across each month when searching for a Malaga Airport to San Juan ticket.

  • There's no need to check back constantly to find out if fares have dropped when you set up a Price Alert. We'll notify you as soon as there's an extra saving on cheap flights from AGP to San Juan.

  • Find a cheap flight from Malaga Airport to San Juan with the help of our filters. Select your ideal departure time, duration and airlines, then sort the results by 'Cheapest' to see the best deals.

Airports in San Juan

Luis Munoz Marin International Airport (SJU)

  • Luis Munoz Marin International Airport (SJU) to the centre of San Juan takes about 10 minutes to reach by car. The centre is roughly 8 kilometres away.

  • Travelling to the centre on public transport typically takes 55 minutes.

  • If you're coming in on a late flight from Malaga Airport to San Juan, nothing beats the convenience of staying near the terminal. Grab your suitcases from the carousel and then be showered and resting soon after at one of these hotels near SJU:

  • Travel at your own speed with a Luis Munoz Marin International Airport rental car. Pick up your wheels from Sixt, Ace Rent a Car or U-Save and see more of San Juan and beyond.

  • To lock in the lowest price, book your ride from Luis Munoz Marin International Airport around two weeks ahead of your flight from AGP to San Juan.

Fernando Luis Ribas Dominicci Airport (SIG)

  • Fernando Luis Ribas Dominicci Airport (SIG) is about 8 kilometres from central San Juan. Following your flight from Malaga Airport to San Juan, it'll take you around 15 minutes to get to the heart of the city in a cab or ride-share.

  • If you're travelling on public transport, it'll take about 1 hour.

  • Hang up the 'Do not disturb' sign and rest at a hotel near SIG. Here are a few options where you can settle in after your AGP to San Juan flight:

Best time to go to San Juan

  • Before scheduling your flights from Malaga Airport to San Juan, consider which time of year is best for you. Peak season in San Juan offers a lively atmosphere and plenty of things to do, while low season means you'll get cheaper hotel deals and smaller crowds.

  • When booking your Malaga Airport to San Juan plane ticket, think about what kind of weather you prefer. September is the warmest month in San Juan, with temperatures ranging from 23ºC (73ºF) to 33ºC (91ºF).

  • For cooler conditions, search for a cheap ticket from AGP to San Juan in February when temperatures average between 20ºC (68ºF) and 28ºC (82ºF).

More about San Juan

  • After booking your flight from Malaga Airport to San Juan, find a hotel that offers the right mix of comfort and location. Make one of these accommodation options your base for exploring San Juan:

  • There are so many things to see and do in this city it can be hard to know where to start. La Garita del morro de san juan bahia, Castillo San Felipe del Morro and Fortaleza Street are top attractions which should be on any good San Juan itinerary.

Explore more of Puerto Rico

  • San Juan is always a good idea, but there are so many other corners of Puerto Rico you should also see. About 113 kilometres west of San Juan, a trip to Aguadilla will keep your itinerary packed. Start with leading sights like El Parterre, Aguadilla Ice Skating Arena and Bandera de los Reyes Magos.

  • Around 105 kilometres west of San Juan, Isabela is another essential stop in Puerto Rico. Get a taste of what this destination has to offer at Amarillo Mango, Urb. Llanos Piscina Park and Noches de Artesania.

Prices shown on this page are estimated lowest prices only. Found in the last 45 days.