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232 € Cheap Flights from Tokyo to Kota Kinabalu

Compare Tokyo to Kota Kinabalu flight deals

Find the cheapest month or even day of the year to fly to Kota Kinabalu

Book the best Kota Kinabalu fare with no extra fees

Flight deals from Tokyo to Kota Kinabalu

Looking for a cheap last-minute deal or the best return flight from Tokyo to Kota Kinabalu? Find the lowest prices on one-way and return tickets right here.
Kota Kinabalu.232 € per passenger.Departing Thu, 4 Sep, returning Mon, 8 Sep.Return flight with China Eastern.Outbound indirect flight with China Eastern, departs from Tokyo Narita on Thu, 4 Sep, arriving in Kota Kinabalu.Inbound indirect flight with China Eastern, departs from Kota Kinabalu on Mon, 8 Sep, arriving in Tokyo Haneda.Price includes taxes and charges.From 232 €, select.
Kota Kinabalu.242 € per passenger.Departing Sat, 27 Sep, returning Thu, 2 Oct.Return flight with Scoot.Outbound indirect flight with Scoot, departs from Tokyo Narita on Sat, 27 Sep, arriving in Kota Kinabalu.Inbound indirect flight with Scoot, departs from Kota Kinabalu on Thu, 2 Oct, arriving in Tokyo Narita.Price includes taxes and charges.From 242 €, select.
Kota Kinabalu.265 € per passenger.Departing Sat, 18 Oct, returning Wed, 22 Oct.Return flight with Philippines AirAsia.Outbound indirect flight with Philippines AirAsia, departs from Tokyo Narita on Sat, 18 Oct, arriving in Kota Kinabalu.Inbound indirect flight with Philippines AirAsia, departs from Kota Kinabalu on Wed, 22 Oct, arriving in Tokyo Narita.Price includes taxes and charges.From 265 €, select.
Kota Kinabalu.267 € per passenger.Departing Mon, 10 Nov, returning Wed, 12 Nov.Return flight with Scoot.Outbound indirect flight with Scoot, departs from Tokyo Narita on Mon, 10 Nov, arriving in Kota Kinabalu.Inbound indirect flight with Scoot, departs from Kota Kinabalu on Wed, 12 Nov, arriving in Tokyo Narita.Price includes taxes and charges.From 267 €, select.
Kota Kinabalu.269 € per passenger.Departing Wed, 27 Aug, returning Wed, 3 Sep.Return flight with Scoot.Outbound indirect flight with Scoot, departs from Tokyo Narita on Wed, 27 Aug, arriving in Kota Kinabalu.Inbound indirect flight with Scoot, departs from Kota Kinabalu on Wed, 3 Sep, arriving in Tokyo Narita.Price includes taxes and charges.From 269 €, select.
Kota Kinabalu.271 € per passenger.Departing Fri, 24 Apr, returning Mon, 27 Apr.Return flight with Scoot.Outbound indirect flight with Scoot, departs from Tokyo Narita on Fri, 24 Apr, arriving in Kota Kinabalu.Inbound indirect flight with Scoot, departs from Kota Kinabalu on Mon, 27 Apr, arriving in Tokyo Narita.Price includes taxes and charges.From 271 €, select.
Kota Kinabalu.275 € per passenger.Departing Thu, 18 Jun, returning Tue, 23 Jun.Return flight with Scoot.Outbound indirect flight with Scoot, departs from Tokyo Narita on Thu, 18 Jun, arriving in Kota Kinabalu.Inbound indirect flight with Scoot, departs from Kota Kinabalu on Tue, 23 Jun, arriving in Tokyo Narita.Price includes taxes and charges.From 275 €, select.
Kota Kinabalu.283 € per passenger.Departing Sun, 1 Feb, returning Sat, 7 Feb.Return flight with Scoot.Outbound indirect flight with Scoot, departs from Tokyo Narita on Sun, 1 Feb, arriving in Kota Kinabalu.Inbound indirect flight with Scoot, departs from Kota Kinabalu on Sat, 7 Feb, arriving in Tokyo Narita.Price includes taxes and charges.From 283 €, select.

Find the cheapest month to fly from Tokyo to Kota Kinabalu

We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like Tokyo to Kota Kinabalu flights are currently cheapest in September.
Aug
from 319 €
Sep
from 232 €
Oct
from 265 €
Nov
from 267 €
Dec
from 286 €
Jan
from 345 €
Feb
from 283 €
Mar
from 297 €
Apr
from 271 €
May
from 288 €
Jun
from 275 €
Jul
from 616 €

Tokyo to Kota Kinabalu: Alternative routes

Compare routes from Tokyo to Kota Kinabalu below. You may find an airport to fly into that's cheaper, faster, or easier than Kota Kinabalu.

Tokyo to Kota Kinabalu: Flight information

The things to know before you go.
Cheapest flight found232 €
Cheapest month to flySeptember

Finding cheap flights from Tokyo to Kota Kinabalu: Frequently asked questions

The best price we found for a return flight from Tokyo to Kota Kinabalu is 232 €. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.
Currently, there are no airlines that fly direct from Tokyo to Kota Kinabalu. But we found flights with one stop from 232 €.
As of August 2025, there are no flights flying from Tokyo to Kota Kinabalu.
The cheapest month to fly from Tokyo to Kota Kinabalu is usually September.
After crunching the numbers on our flight calendar, we found that it is currently cheapest to fly from Tokyo to Kota Kinabalu Airport on Thursday, 4 September 2025.
No airlines currently offer direct flights between Tokyo and Kota Kinabalu Airport. Most routes have one or more stops.
We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to Kota Kinabalu but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.
We crunched all the numbers in our flight calendar and it looks like the cheapest time to book a flight to Kota Kinabalu is around 40 days in advance, so don’t leave your flight to the last minute.
The cheapest airline that flies to Kota Kinabalu is China Eastern .

Travelling from Tokyo to Kota Kinabalu International Airport (BKI): What you need to know

  • There are two main airports you can start your trip from in Tokyo. Explore your options leaving from Haneda Airport (HND) or Narita International Airport (NRT) when reserving your flight from Tokyo to Kota Kinabalu International Airport (BKI).

  • Kota Kinabalu International Airport is located in Kota Kinabalu. The city runs on the UTC+8 timezone and is one hour behind Tokyo.

  • Get to the airport on time so you don't miss your flight from Tokyo to BKI. Be there at least two hours ahead for international flights and an hour early for domestic departures to avoid any last-minute rush.

  • Heading away during a peak time like public or school holidays? Expect longer queues at security and check-in. For peace of mind, arrive up to four hours before international flights and two hours before domestic departures.

Airports in Tokyo

Haneda Airport (HND)

  • A stopover is the perfect opportunity to break up your trip and possibly even visit a new city. When searching for cheap flights from Tokyo to BKI departing from Haneda Airport (HND), uncheck the 'Direct flights only' box to get ideas for where to visit along the way. Popular options include:

    • Guangzhou Baiyun International Airport (CAN)

    • Shanghai Pudong International Airport (PVG)

    • Hong Kong International Airport (HKG)

  • The distance from central Tokyo to HND is around 16 kilometres. Depending on traffic conditions, it'll take you about 15 minutes to get there if you're driving, catching a cab or ride-sharing.

  • Looking for a comfortable hotel near Haneda Airport? If you've booked an early flight from Tokyo to Kota Kinabalu International Airport, these stays will have you sleeping a quick hop from check-in:

  • When it comes to the on-time performance of Haneda Airport, data shows 73.52% of flights complete their journey on time.

  • HND's address is 3丁目 Hanedakuko, Ota.

Narita International Airport (NRT)

  • Looking to fly out of Narita International Airport (NRT)? Direct Tokyo to Kota Kinabalu International Airport (BKI) plane tickets can be booked from this popular hub.

  • From NRT, direct flights from Tokyo to BKI can be booked with Malaysia Airlines.

  • Malaysia Airlines is the top choice for passengers flying from NRT to BKI.

  • Experience more along the way with a stopover on your flight from Tokyo to Kota Kinabalu International Airport. Check out these connections between Narita International Airport and BKI:

    • Shanghai Pudong International Airport (PVG)

    • Incheon International Airport (ICN)

    • Hong Kong International Airport (HKG)

  • NRT is approximately 64 kilometres from central Tokyo. It'll take 1 hour or so to reach the terminal when driving from the city centre.

  • Start your holiday sooner with an additional night away from home. Before your Tokyo to BKI flight, stay in one of these hotels near Narita International Airport:

  • 70.53% of flights out of Narita International Airport make it to their destination as expected.

  • NRT is located at 成田空港第2PTB(バス), Narita.

About Kota Kinabalu International Airport (BKI)

How to find the cheapest flights from Tokyo to Kota Kinabalu International Airport (BKI)

  • 117 € is the lowest price for a one-way ticket from Tokyo to Kota Kinabalu International Airport. Return flights start at 232 €. These prices can change depending on demand.

  • Booking in advance is often the key to scoring a cheap flight from Tokyo to BKI. Fares tend to rise as seats fill up, so the closer you get to departure, the more you'll likely spend.

  • Cheap Tokyo to Kota Kinabalu International Airport tickets are easier to find if you're not locked into specific dates. Use the 'Whole month' tool to compare fares throughout the month and then fly out on the cheapest day.

  • Never miss a deal on plane tickets from Tokyo to BKI by setting up a Price Alert. We'll send you an email or notification through the app when prices go down.

  • Filters make it easier to land a deal on your flight from Tokyo to Kota Kinabalu International Airport. Pick the flight times, carriers and stops that look good to you. Then sort the results by 'Cheapest' to find the best price quickly.

The best time to fly from Tokyo to Kota Kinabalu International Airport (BKI)

  • Picture the kind of break you want when deciding when to fly. February is the quietest month to visit Kota Kinabalu. August is when most people book flights from Tokyo to Kota Kinabalu International Airport (BKI), which may be perfect if you enjoy travelling when it's busier.

  • The warmest month in Kota Kinabalu is May, with temperatures ranging between 24ºC (75ºF) and 31ºC (88ºF). Lock in your Tokyo to BKI plane ticket then if you enjoy this type of weather.

  • If you like cooler conditions, search for a cheap ticket from Tokyo to Kota Kinabalu International Airport in February when temperatures are between 23ºC (73ºF) and 29ºC (84ºF).

More about Kota Kinabalu

  • Start your Kota Kinabalu trip off on the right foot by choosing the ideal place to stay. After booking your flight from Tokyo to Kota Kinabalu International Airport, explore our range of accommodation options including:

  • Every great journey has to include some sightseeing. Tunku Abdul Rahman National Park, Danum Valley Conservation Area (DVCA) and Sipadan Dive Centre Sdn. Bhd. Are must-do's during your Kota Kinabalu adventure.

Explore more of Malaysia

  • You've done Kota Kinabalu, now it's time to discover more of Malaysia. Journey about 225 kilometres east to Sandakan to check off its top attractions. From Sepilok Orang Utan Sanctuary (Pusat Pemulihan Orangutan) to Sun Bear Conservation Centre, Sepilok and Sandakan Rainforest Park, your itinerary will be busy.

  • If you want to check out another well-known destination in Malaysia, consider Tawau, roughly 274 kilometres south-east of Kota Kinabalu. D'mount kinabalu adventure, Jungleland and Hot Springs Tawau are among its highlights.

Plan the rest of your trip from Tokyo to Kota Kinabalu

Prices shown on this page are estimated lowest prices only. Found in the last 45 days.