73 € Cheap Flights from Tokyo to Nagasaki

Compare Tokyo to Nagasaki flight deals

Find the cheapest month or even day of the year to fly to Nagasaki

Book the best Nagasaki fare with no extra fees

Flight deals from Tokyo to Nagasaki

Looking for a cheap last-minute deal or the best return flight from Tokyo to Nagasaki? Find the lowest prices on one-way and return tickets right here.

Find the cheapest month to fly from Tokyo to Nagasaki

We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like Tokyo to Nagasaki flights are currently cheapest in December.

Direct flights from Tokyo to Nagasaki

Tokyo to Nagasaki: Alternative routes

Compare routes from Tokyo to Nagasaki below. You may find an airport to fly into that's cheaper, faster, or easier than Nagasaki.

Tokyo to Nagasaki: Flight information

The things to know before you go.
Cheapest flight found73 €
Cheapest month to flyJanuary
Average flight time2 hrs, 9 mins
Most popular airlineANA (All Nippon Airways)
Average flights per week340

Finding cheap flights from Tokyo to Nagasaki: Frequently asked questions

The best price we found for a return flight from Tokyo to Nagasaki is 73 €. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.
2 hours and 8 minutes is the average flight time from Tokyo to Nagasaki.
ANA (All Nippon Airways), Japan Airlines and Hawaiian Airlines fly direct from Tokyo to Nagasaki.
As of October 2025, there are 383 flights per week flying from Tokyo to Nagasaki.
The cheapest month to fly from Tokyo to Nagasaki is usually January.
After crunching the numbers on our flight calendar, we found that it is currently cheapest to fly from Tokyo to Nagasaki Airport on Wednesday, 21 January 2026.
Yes – the average flight time is 2 hours and 9 minutes.
We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to Nagasaki but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.
We crunched all the numbers in our flight calendar and it looks like the cheapest time to book a flight to Nagasaki is around 40 days in advance, so don’t leave your flight to the last minute.
The cheapest airline that flies to Nagasaki is Jetstar Japan .

Travelling from Tokyo to Nagasaki Airport (NGS): What you need to know

  • The first chapter of your trip begins at one of Tokyo's main airports, Haneda Airport (HND) or Narita International Airport (NRT). Explore the options for booking a flight from Tokyo to Nagasaki Airport (NGS) setting off from either of these bases.

  • The average time for a direct Tokyo to Nagasaki Airport flight is 1 hour 55 minutes.

  • Tokyo and Nagasaki (where Nagasaki Airport is located) share the UTC+9 timezone. That means you won't need to adjust your watch when you land.

  • With 101 direct flights a week between the two airports, Haneda Airport (HND) to Nagasaki Airport (NGS) is the busiest route. ANA operates the earliest flight at 7:05am. If you prefer to make the most of your day before flying, the latest departure from HND to NGS is with JAL at 7:30pm.

  • Give yourself enough time to make your flight from Tokyo to NGS. As a general rule, turn up at least two hours before international departures and an hour ahead for domestic flights.

  • Peak season means busier airports, so show up even earlier. Give yourself at least two hours before a domestic flight and four hours for an international journey to keep to your schedule.

Airports in Tokyo

Haneda Airport (HND)

  • You can book a direct flight from Tokyo to Nagasaki Airport (NGS) departing from Haneda Airport (HND).

  • ANA is a popular airline that offers direct flights from Tokyo to Nagasaki Airport jetting out of HND.

  • The majority of passengers choose to book seats with ANA from HND to NGS.

  • The carrier with the best on-time arrival rate on this route is ANA.

  • HND is around 16 kilometres from central Tokyo. If you're catching a cab, ride-sharing or driving from the centre, it'll take 15 minutes or so to get there, depending on the traffic.

  • Searching for a convenient hotel near Haneda Airport? If you're catching an early flight from Tokyo to Nagasaki Airport, these accommodation options will put you conveniently close to check-in:

  • Of the departures from Haneda Airport, 73.52% arrive as scheduled at their destination.

  • HND is located at 3丁目 Hanedakuko, Ota.

Narita International Airport (NRT)

  • You can book a direct Tokyo to Nagasaki Airport (NGS) plane ticket with departures from Narita International Airport (NRT). Work out whether leaving from NRT works best for your plans.

  • Get on your direct flight from Tokyo to NGS with Jetstar Japan. This is one of the leading carriers operating this route out of NRT.

  • Jetstar Japan takes the lead in bookings on the NRT to NGS route.

  • If you're looking for a carrier that's reliably punctual, go with Jetstar Japan. It has an on-time performance of 91.8% for flights between Narita International Airport and Nagasaki Airport.

  • Depending on traffic, you can drive to NRT from the centre of Tokyo in around 1 hour. The airport is approximately 64 kilometres away.

  • Want to enjoy an extra night away before your Tokyo to NGS flight? Kick back in a hotel near Narita International Airport before your adventure officially starts. These stays are expecting you:

  • When it comes to keeping flights on track, Narita International Airport has an on-time arrival performance of 70.53%.

  • The address for NRT is 成田空港第2PTB(バス), Narita.

About Nagasaki Airport (NGS)

  • If you're arriving on a late flight from Tokyo to Nagasaki Airport, few things beat the convenience of staying close to the terminal. Grab your luggage from the carousel and then be showered and sleeping soon after at one of these options near NGS:

  • Travel at your own pace with a Nagasaki Airport rental car. Book your wheels from スカイレンタカー, Budget or バジェットレンタカー and find adventure across Nagasaki and beyond.

  • Booking your vehicle around one week in advance of your Tokyo to Nagasaki Airport flight can help you secure the lowest rate.

  • You'll find NGS at 593 Mishimamachi, Omura.

How to find the cheapest flights from Tokyo to Nagasaki Airport (NGS)

  • 36 € is currently the best price for a one-way ticket from Tokyo to Nagasaki Airport. Return flights start at 73 €. These fares may change based on demand and availability.

  • To snap up cheap flights from Tokyo to NGS, book your plane ticket four months ahead of your departure date.

  • Organise your trip for September. That's the best month for scoring a great bargain on Tokyo to Nagasaki Airport tickets. If you're flexible on when you fly, use the 'Whole month' tool to find the lowest price across every month.

  • You don't need to check every day to find out if fares have dropped when you set up a Price Alert. We'll let you know the moment a new deal shows up on plane tickets from Tokyo to NGS.

  • Find a cheap flight from Tokyo to Nagasaki Airport by using filters. Choose your preferred times, airlines and number of stops, then sort the results by 'Cheapest' for the best deals.

The best time to fly from Tokyo to Nagasaki Airport (NGS)

  • June is when most people book flights from Tokyo to Nagasaki Airport (NGS). Visit Nagasaki in February for a more laid-back experience.

  • Lock in a Tokyo to NGS plane ticket departing in August if you're eager to explore the city during its warmest month. Expect temperatures in Nagasaki to range from 24ºC (75ºF) to 29ºC (84ºF).

  • January sees temperatures of between 5ºC (41ºF) and 11ºC (52ºF). Search for cheap tickets from Tokyo to Nagasaki Airport around that time if you want to travel in cooler conditions.

More about Nagasaki

  • When it comes to looking for somewhere to lay your head, you'll find the best places to stay in Nagasaki right here. Explore these options as soon as you've locked in your flight from Tokyo to Nagasaki Airport:

  • There are so many things to see and do in this city, it can be hard to work out where to begin. Mt. Inasa, Hypocenter of Atomic Bombing and Nagasaki Peace Memorial Hall for the Atomic Bomb Victims are top sights which should be on any good Nagasaki itinerary.

Explore more of Japan

  • Fukuoka is just one of the many cities in Japan waiting to be explored after you've experienced Nagasaki. Around 88 kilometres away to the north-east, its top attractions include Itsukushima Shrine, teamLab Forest Fukuoka and Life-Size RX-93ff ν Gundam Statue.

  • If you're ready to explore another well-known destination in Japan, head for Kagoshima, about 161 kilometres south of Nagasaki. Mt. Sakurajima, Sakurajima and Rainbow Beach are among the biggest draws.

Prices shown on this page are estimated lowest prices only. Found in the last 45 days.